Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
HNSC rs150060035 chr6:15271158 C/G 1.58E-5 510 22.2 21.1 9.37 KM Plot
HNSC rs150073173 chr1:36257660 G/A 9.73E-14 512 21.3 27.43 3.02 KM Plot
HNSC rs150528805 chr6:15271109 T/C 1.58E-5 510 22.2 21.1 9.37 KM Plot
HNSC rs1565054 chr2:99855669 T/C 1.55E-8 513 6.83 20.1 22.2 KM Plot
HNSC rs1591467 chr1:26579223 C/T 1.75E-5 515 6.8 20.58 22.1 KM Plot
HNSC rs1609606 chr13:20357220 A/G 1.75E-5 515 22.9 16.15 25.87 KM Plot
HNSC rs163327 chr3:161062724 A/G 1.89E-6 515 25.15 22.5 17.75 KM Plot
HNSC rs165857 chr22:21205257 A/G 8.0E-6 498 21.48 23.77 14.03 KM Plot
HNSC rs17302700 chr21:47969793 C/T 3.84E-8 509 21.3 22.9 2.87 KM Plot
HNSC rs17305503 chr21:48055659 G/C 4.98E-9 512 21.53 21.02 2.73 KM Plot
HNSC rs17806489 chr17:18249611 C/T 4.56E-5 515 21.8 21.3 9.73 KM Plot
HNSC rs1803527 chr1:16451413 C/T 4.14E-7 508 4.58 21.13 21.65 KM Plot
HNSC rs1843807 chr2:99831570 T/C 3.67E-8 513 6.83 19.33 22.2 KM Plot
HNSC rs186131233 chr2:100099497 T/A 3.33E-5 502 22.42 20.15 9.77 KM Plot
HNSC rs186740 chr5:54550117 A/G 3.7E-5 504 12.37 23.27 21.77 KM Plot